Eijkman Institute for Molecular Biology, Jakarta

From Bioindonesia.com

Eijkman Institute for Molecular Biology (Eijkman Institute) is an Indonesian government funded research institute of which main mission is advancing the progress of molecular biology and biotechnology related basic research in Indonesia, particularly in the biomedical field. This institute is under the auspices of and responsible directly to the Indonesian Minister for Research and Technology.

Contents 1 Bioinformatics research activities at the Eijkman Institute 2 Software used in bioinformatics analysis 3 Contacts 4 External Link

Bioinformatics research activities at the Eijkman Institute

1. Data Mining: Use data mining to solve biological problem, e.g. secondary structure or protein topology prediction; antigenic determinant prediction
2. Molecular Simulation: Protein modeling and molecular dynamics; H5N1 Hemaglutinin protein strains from Indonesia; General 3D Modeling
3. Population dynamics and Epidemiology: Malaria drug resistance
4. Molecular Evolution: Malaria (pfEMP1); Hepatitis B subtyping and host interaction; population database for forensic; Ethnic evolution

Software used in bioinformatics analysis

1. FinchTV               : edit trace file seq from ABI DNA sequencer
2. Bioedit                 : general editing tool for multiple sequence alignment
3. Clustal W/X         : multiple sequence alignment
4. Perlprimer           : designing primer
5. Primer 3               : editing primer designed
6. ApE                       : single sequence analysis
7. phylip                   : phylogenetic analysis
8. Mr Bayes             :
9. Tree Puzzle        :
   
10. PAML                   :
    
11. Molphy                :
    
12. Tree View            :
    
13. TreeDyn              :

Contacts

Contact person: Hidayat Trimarsanto (anto@eijkman.go.id), or Ismail Eko P (eko@eijkman.go.id)
Phone: +62213917131

External Link

• Official site of Eijkman Institute for Molecular Biology